U
    f»{j‰�  ã                   @   sJ  d Z ddlZddlmZ ddlmZ ddlZddlZddlZdd„ Z	dd„ Z
d\d
dœdd„Zdd„ Zdd„ Zdd„ Zd]dd„Zdd„ Zdd„ Zdd„ Zdd„ Zdd„ Zd d!„ Zd"d#„ Zd	d	d	d$gd	d	d	d	d	d	d	d	d	d	d%ejgd	d	d&œZG d'd(„ d(eƒZd)d*„ Zd^d+d,„Zd_d-d.„ZG d/d0„ d0eƒZd1d2„ Zd3d4„ Z d5d6„ Z!d7d8„ Z"d`d9d:„Z#dad=d>„Z$dbd?d@„Z%dAdB„ Z&z0ddl'Z'e	e'j(dCdDƒ�r†e)‚e'j*Z*dcdEdF„Z+W n e)k
�r²   d	Z,Y nX e -dGdH¡ .¡ dHkZ,e,�sèdIdF„ Z+e/Z*ej0Z0ej1Z1n*e+ƒ dJdK„ ƒZ0e+ƒ dLdM„ ƒZ2e+ƒ dNdO„ ƒZ1dPdQ„ Z3dRdS„ Z4dddTdU„Z5dedVdW„Z6dXdY„ Z7dZd[„ Z8dS )fzËCompatibility fixes for older versions of libraries

If you add content to this file, please give the version of the package
at which the fix is no longer needed.

# originally copied from scikit-learn

é    N)Úlog)Úpprintc              
   C   sV   ddl m} tjdd��4 t d¡ td| › d|› d|› d	�ƒW  5 Q R £ S Q R X d
S )a¶  Compare two version strings via a user-specified operator.

    Parameters
    ----------
    version_a : str
        First version string.
    operator : '==' | '>' | '<' | '>=' | '<='
        Operator to compare ``version_a`` and ``version_b`` in the form of
        ``version_a operator version_b``.
    version_b : str
        Second version string.

    Returns
    -------
    bool
        The result of the version comparison.
    r   )ÚparseT©ÚrecordÚignorezparse("z") z parse("z")N)Zpackaging.versionr   ÚwarningsÚcatch_warningsÚsimplefilterÚeval)Z	version_aÚoperatorZ	version_br   © r   úH/var/www/html/bwave/python/venv/lib/python3.8/site-packages/mne/fixes.pyÚ_compare_version   s    
r   c                 C   sJ   t  | ¡r8t jt  | ¡|d�dt jt  | ¡|d�  } nt j| |d�} | S )zšCompute marginal median on complex data safely.

    Can be removed when numpy introduces a fix.
    See: https://github.com/scipy/scipy/pull/12676/.
    ©Úaxisy              ð?)ÚnpÚiscomplexobjZmedianÚrealÚimag)Údatar   r   r   r   Ú_median_complex:   s    
ÿr   F)Zvar_positionalZvar_keyword©Úexcludec                   sj   t  | ¡j}tdd„ ˆ D ƒƒ‰ ‡ fdd„| ¡ D ƒ}|rbdd„ | ¡ D ƒ}t|ƒdkrZd }||fS |S d S )Nc                 s   s   | ]}t tj| ¡ ƒV  qd S ©N)ÚgetattrÚinspectÚ	ParameterÚupper)Ú.0Úexr   r   r   Ú	<genexpr>Q   s     z_get_args.<locals>.<genexpr>c                    s   g | ]\}}|j ˆ kr|‘qS r   )Úkind)r   ÚkeyÚparamr   r   r   Ú
<listcomp>R   s     
 z_get_args.<locals>.<listcomp>c                 S   s   g | ]}|j |jkr|j‘qS r   )r"   ÚVAR_POSITIONALÚname)r   r$   r   r   r   r%   T   s    ÿr   )r   Ú	signatureÚ
parametersÚsetÚitemsÚvaluesÚlen)ÚfunctionÚvarargsr   ÚparamsÚargsr   r   r   Ú	_get_argsJ   s    r2   c              
   K   s�   ddl m} | dd¡r tdƒ‚z|j| f|ŽW S  tjjk
rŠ } z8ddlm} |d|f ƒ |j| fd	d
i|—Ž W Y ¢S d}~X Y nX dS )z=Wrapper to get around the SVD did not converge error of deathr   ©ÚlinalgZoverwrite_aFz.Cannot set overwrite_a=True with this functioné   )Úwarnz8SVD error (%s), attempting to use GESVD instead of GESDDZlapack_driverZgesvdN)	Úscipyr4   ÚgetÚ
ValueErrorÚsvdr   ZLinAlgErrorÚutilsr6   )ÚAÚkwargsr4   Úexpr6   r   r   r   Ú	_safe_svd]   s    ÿr?   c                 C   s   ddl m} || ƒS )Nr   )Ú
csc_matrix)Zscipy.sparser@   )Úxr@   r   r   r   Ú_csc_matrix_casto   s    rB   c                  C   sD   zddl } d}W n tk
r(   d}Y nX |r<ddlm} nt}|S )z"Get the geometry reading function.r   NTF)Úread_geometry)ZnibabelÚImportErrorZnibabel.freesurferrC   Ú_read_geometry)ZnibZhas_nibabelrC   r   r   r   Ú_get_read_geometryw   s    
rF   c              	   C   sb  ddl m}m} tƒ }d}d}d}t| dƒ��Þ}	||	ƒ}
|
||fk�rr||	ƒ}||	ƒ}|
|krbdnd\}}t |	||d	 ¡ tj¡| }| 	d
d	¡}||	|d ƒ}| 	|d¡}tj
d| d	ftjd�}d}|D ] }|d d dk�r*|d |d |d	 f||< |d7 }|d |d	 |d f||< |d7 }qÎ|d |d |d f||< |d7 }|d |d |d	 f||< |d7 }qÎn–|
|k�r |	 ¡  d¡ d¡}|	 ¡  t |	dd¡d }t |	dd¡d }t |	d|d	 ¡ 	|d	¡}t |	d|d	 ¡ 	|d	¡}|�rt|	ƒ}ntdƒ‚W 5 Q R X | tj¡}||f}|�rNt|ƒdk�rDt d¡ ||f7 }|�r^||f7 }|S )zBackport from nibabel.r5   )Ú_fread3Ú_fread3_manyiþÿÿ iÿÿÿ iýÿÿ Úrb)z>i2g      Y@)ú>f4ç      ð?é   éÿÿÿÿé   é   ©Údtyper   ó   
úutf-8ú>i4rJ   z/File does not appear to be a Freesurfer surfacez+No volume information contained in the file)ZsurfacerG   rH   ÚdictÚopenr   ÚfromfileÚastypeÚfloat64ÚreshapeÚzerosZint64ÚreadlineÚrstripÚdecodeÚ_read_volume_infor9   r-   r   r6   )ÚfilepathZread_metadataZ
read_stamprG   rH   Úvolume_infoZTRIANGLE_MAGICZ
QUAD_MAGICZNEW_QUAD_MAGICÚfobjÚmagicZnvertZnquadÚfmtÚdivZcoordsZquadsZfacesZnfaceZquadZcreate_stampZvnumZfnumÚretr   r   r   rE   …   s\    





rE   c                 C   s   t | dt | ddƒƒS )z$Get the unform/randint from the rng.ZintegersÚrandintN©r   )Úrngr   r   r   Úrng_uniformÆ   s    rj   c                 C   s^   t  | ¡} | jdkrtdƒ‚| j\}}|dkr6tdƒ‚| dd…df dk ¡ sVtdƒ‚| |fS )	zHelper to validate a SOS inputrO   zsos array must be 2Dé   z'sos array must be shape (n_sections, 6)NrL   r5   zsos[:, 3] should be all ones)r   Z
atleast_2dÚndimr9   ÚshapeÚall)ÚsosZ
n_sectionsÚmr   r   r   Ú_validate_sosÌ   s    


rq   c                 C   s,   t  | j¡}t  |¡rt jnt j}| |¡S r   )r   Z
asanyarrayZdataobjr   Z
complex128rY   rX   )Zimgr   rQ   r   r   r   Ú_get_img_fdataÞ   s    rr   c                 C   s  t ƒ }t | dd¡}t |dg¡sZt |t | dd¡g¡}t |dddg¡sZt d¡ |S ||d< dD ]˜}|  ¡  d	¡ 	d
¡}|d  
¡ |ksšt|ƒdkr¢tdƒ‚|dkr¼|d  
¡ ||< qf|dkrât |d  	¡ ¡ t¡||< qft |d  	¡ ¡ t¡||< qf|S )z}An implementation of nibabel.freesurfer.io._read_volume_info, since old
    versions of nibabel (<=2.1.0) don't have it.
    rT   r5   é   rO   r   úUnknown extension code.Úhead)ÚvalidÚfilenameÚvolumeÚ	voxelsizeÚxrasÚyrasÚzrasÚcrasrS   ú=zError parsing volume info.©rv   rw   rx   )rU   r   rW   Úarray_equalZconcatenater   r6   r\   r^   ÚsplitÚstripr-   ÚIOErrorÚarrayrX   ÚintÚfloat)rb   ra   ru   r#   Úpairr   r   r   r_   ä   s$    
r_   c              
   C   sR  ddddddddd	g	}t |  ¡ ƒ |¡}t|ƒd
krDtd| ¡  ƒ‚tƒ }|D ]ø}|dkrªt | | dg¡sŒt | | dd
dg¡sŒt	 
d¡ | tj| | dd� ¡ ¡ qN|dkrÔ| | }| d ||¡ d¡¡ qN|dk�r| | }| d ||d
 |d |d ¡ d¡¡ qN| | }| d | d¡|d
 |d |d ¡ d¡¡ qNd |¡S )z}An implementation of nibabel.freesurfer.io._serialize_volume_info, since
    old versions of nibabel (<=2.1.0) don't have it.ru   rv   rw   rx   ry   rz   r{   r|   r}   r   zInvalid volume info: %s.rs   rO   rt   rT   rP   r   z{} = {}
rS   z{} = {} {} {}
r5   z {} = {:0.10g} {:0.10g} {:0.10g}
rk   ó    )r*   ÚkeysÚ
differencer-   r9   ÚpopÚlistr   r€   r   r6   Úappendr„   ÚtobytesÚformatÚencodeÚljustÚjoin)ra   r‰   ÚdiffÚstringsr#   Úvalr   r   r   Ú_serialize_volume_info   sN     ÿ ÿ

   ÿÿ   ÿÿr–   c                 C   s   t | ddƒdkS )a  Returns True if the given estimator is (probably) a classifier.

    Parameters
    ----------
    estimator : object
        Estimator object to test.

    Returns
    -------
    out : bool
        True if estimator is a classifier and False otherwise.
    Ú_estimator_typeNÚ
classifierrh   ©Z	estimatorr   r   r   Úis_classifier"  s    rš   c                 C   s   t | ddƒdkS )a  Returns True if the given estimator is (probably) a regressor.

    Parameters
    ----------
    estimator : object
        Estimator object to test.

    Returns
    -------
    out : bool
        True if estimator is a regressor and False otherwise.
    r—   NZ	regressorrh   r™   r   r   r   Úis_regressor2  s    r›   Z2darrayT)Znon_deterministicZrequires_positive_XZrequires_positive_yZX_typesZ
poor_scoreZno_validationZmultioutputÚ	allow_nanZ	statelessZ
multilabelZ
_skip_testZ_xfail_checksZmultioutput_onlyÚbinary_onlyZrequires_fitZpreserves_dtypeZ
requires_yÚpairwisec                   @   sF   e Zd ZdZedd„ ƒZddd„Zdd„ Zd	d
„ Zdd„ Z	dd„ Z
dS )ÚBaseEstimatorzüBase class for all estimators in scikit-learn.

    Notes
    -----
    All estimators should specify all the parameters that can be set
    at the class level in their ``__init__`` as explicit keyword
    arguments (no ``*args`` or ``**kwargs``).
    c                 C   st   t | jd| jƒ}|tjkrg S t |¡}dd„ |j ¡ D ƒ}|D ] }|j|jkr@t	d| |f ƒ‚q@t
dd„ |D ƒƒS )z%Get parameter names for the estimatorZdeprecated_originalc                 S   s&   g | ]}|j d kr|j|jkr|‘qS ©Úself)r'   r"   ÚVAR_KEYWORD©r   Úpr   r   r   r%   p  s    
 ÿz2BaseEstimator._get_param_names.<locals>.<listcomp>z§scikit-learn estimators should always specify their parameters in the signature of their __init__ (no varargs). %s with constructor %s doesn't  follow this convention.c                 S   s   g | ]
}|j ‘qS r   )r'   r£   r   r   r   r%   {  s     )r   Ú__init__Úobjectr   r(   r)   r,   r"   r&   ÚRuntimeErrorÚsorted)ÚclsÚinitZinit_signaturer)   r¤   r   r   r   Ú_get_param_namesb  s    

ûzBaseEstimator._get_param_namesTc              
      s²   t ƒ }|  ¡ D ]ž‰ t dt¡ zDtjdd��}t| ˆ dƒ}W 5 Q R X t	|ƒr`|d j
tkr`W ¢qW 5 tj d¡ X |r¤t|dƒr¤| ¡  ¡ }| ‡ fdd„|D ƒ¡ ||ˆ < q|S )	aX  Get parameters for this estimator.

        Parameters
        ----------
        deep : bool, optional
            If True, will return the parameters for this estimator and
            contained subobjects that are estimators.

        Returns
        -------
        params : dict
            Parameter names mapped to their values.
        Úalwaysr   Tr   NÚ
get_paramsc                 3   s"   | ]\}}ˆ d  | |fV  qdS )Ú__Nr   )r   Úkr•   ©r#   r   r   r!   ž  s     z+BaseEstimator.get_params.<locals>.<genexpr>)rU   r«   r   r
   ÚDeprecationWarningÚfiltersr‹   r	   r   r-   ÚcategoryÚhasattrr­   r+   Úupdate)r¡   ÚdeepÚoutÚwÚvalueZ
deep_itemsr   r°   r   r­   }  s    

zBaseEstimator.get_paramsc           	      K   s¤   |s| S | j dd�}| ¡ D ]‚\}}| dd¡}t|ƒdkrv|\}}||kr\td|| f ƒ‚|| }|jf ||iŽ q||kr’td|| jjf ƒ‚t| ||ƒ q| S )aÖ  Set the parameters of this estimator.

        The method works on simple estimators as well as on nested objects
        (such as pipelines). The latter have parameters of the form
        ``<component>__<parameter>`` so that it's possible to update each
        component of a nested object.

        Parameters
        ----------
        **params : dict
            Parameters.

        Returns
        -------
        inst : instance
            The object.
        T©r¶   r®   r5   zsInvalid parameter %s for estimator %s. Check the list of available parameters with `estimator.get_params().keys()`.)	r­   r+   r�   r-   r9   Ú
set_paramsÚ	__class__Ú__name__Úsetattr)	r¡   r0   Zvalid_paramsr#   r¹   r�   r'   Zsub_nameZ
sub_objectr   r   r   r»   ¢  s&    ý
ýzBaseEstimator.set_paramsc                 C   s    | j j}d|t| jdd�ƒf S )Nz%s(%s)Frº   )r¼   r½   r   r­   )r¡   Ú
class_namer   r   r   Ú__repr__Î  s    zBaseEstimator.__repr__c                 C   s   t S r   )Ú_DEFAULT_TAGSr    r   r   r   Ú
_more_tagsÖ  s    zBaseEstimator._more_tagsc                 C   s<   i }t t | j¡ƒD ]"}t|dƒr| | ¡}| |¡ q|S )NrÂ   )Úreversedr   Úgetmror¼   r´   rÂ   rµ   )r¡   Zcollected_tagsZ
base_classZ	more_tagsr   r   r   Ú	_get_tagsÙ  s    

zBaseEstimator._get_tagsN)T)r½   Ú
__module__Ú__qualname__Ú__doc__Úclassmethodr«   r­   r»   rÀ   rÂ   rÅ   r   r   r   r   rŸ   X  s   	

%,rŸ   c                  C   s6   zddl m}  W n  tk
r0   ddlm}  Y nX | S )Nr   ©Úcheck_scoring)Zsklearn.metricsrË   rD   Zsklearn.metrics.scorerrÊ   r   r   r   Ú_get_check_scoringç  s
    rÌ   c                    s^   zddl m} |ˆ |ˆƒW S  tk
rX   ddlm‰ ‡ ‡‡fdd„| ¡ D ƒ}| Y S X dS )a  Check and validate the parameters passed during `fit`.

    Parameters
    ----------
    X : array-like of shape (n_samples, n_features)
        Data array.

    fit_params : dict
        Dictionary containing the parameters passed at fit.

    indices : array-like of shape (n_samples,), default=None
        Indices to be selected if the parameter has the same size as
        `X`.

    Returns
    -------
    fit_params_validated : dict
        Validated parameters. We ensure that the values support
        indexing.
    r   )Ú_check_fit_params)Ú_validationc                    s    i | ]\}}|ˆ  ˆ |ˆ¡“qS r   )Z_index_param_value)r   r¯   Úv©ÚXrÎ   Úindicesr   r   Ú
<dictcomp>  s   ÿ z%_check_fit_params.<locals>.<dictcomp>N)Zsklearn.utils.validationrÍ   rD   Zsklearn.model_selectionrÎ   r+   )rÑ   Z
fit_paramsrÒ   Z_sklearn_check_fit_paramsZfit_params_validatedr   rÐ   r   rÍ   ï  s    ÿÿrÍ   c                 C   s‚   t  | ¡} | jdkr t  | d¡} | jd dkr8t d¡ |rVt  | j| ¡| jd  }nt j	| jdd�}|jdkr~t  
|gg¡}|S )aB  Computes the Maximum likelihood covariance estimator


    Parameters
    ----------
    X : ndarray, shape (n_samples, n_features)
        Data from which to compute the covariance estimate

    assume_centered : Boolean
        If True, data are not centered before computation.
        Useful when working with data whose mean is almost, but not exactly
        zero.
        If False, data are centered before computation.

    Returns
    -------
    covariance : 2D ndarray, shape (n_features, n_features)
        Empirical covariance (Maximum Likelihood Estimator).

    r5   )r5   rM   r   zBOnly one sample available. You may want to reshape your data array)Zbias)r   Zasarrayrl   rZ   rm   r   r6   ÚdotÚTZcovr„   )rÑ   Úassume_centeredÚ
covariancer   r   r   Úempirical_covariance  s    



rØ   c                   @   sP   e Zd ZdZddd„Zdd„ Zdd	„ Zddd„Zddd„Zddd„Z	dd„ Z
d
S )ÚEmpiricalCovarianceaß  Maximum likelihood covariance estimator

    Read more in the :ref:`User Guide <covariance>`.

    Parameters
    ----------
    store_precision : bool
        Specifies if the estimated precision is stored.

    assume_centered : bool
        If True, data are not centered before computation.
        Useful when working with data whose mean is almost, but not exactly
        zero.
        If False (default), data are centered before computation.

    Attributes
    ----------
    covariance_ : 2D ndarray, shape (n_features, n_features)
        Estimated covariance matrix

    precision_ : 2D ndarray, shape (n_features, n_features)
        Estimated pseudo-inverse matrix.
        (stored only if store_precision is True)

    TFc                 C   s   || _ || _d S r   )Ústore_precisionrÖ   )r¡   rÚ   rÖ   r   r   r   r¥   U  s    zEmpiricalCovariance.__init__c                 C   s0   ddl m} || _| jr&| |¡| _nd| _dS )ar  Saves the covariance and precision estimates

        Storage is done accordingly to `self.store_precision`.
        Precision stored only if invertible.

        Parameters
        ----------
        covariance : 2D ndarray, shape (n_features, n_features)
            Estimated covariance matrix to be stored, and from which precision
            is computed.

        r   r3   N)r7   r4   Úcovariance_rÚ   ÚpinvhÚ
precision_)r¡   r×   r4   r   r   r   Ú_set_covarianceY  s
    z#EmpiricalCovariance._set_covariancec                 C   s*   ddl m} | jr| j}n| | j¡}|S )zºGetter for the precision matrix.

        Returns
        -------
        precision_ : array-like,
            The precision matrix associated to the current covariance object.

        r   r3   )r7   r4   rÚ   rÝ   rÜ   rÛ   )r¡   r4   Ú	precisionr   r   r   Úget_precisionp  s
    	z!EmpiricalCovariance.get_precisionNc                 C   sB   | j rt |jd ¡| _n| d¡| _t|| j d�}|  |¡ | S )a³  Fit the Maximum Likelihood Estimator covariance model.

        Parameters
        ----------
        X : array-like, shape = [n_samples, n_features]
          Training data, where n_samples is the number of samples and
          n_features is the number of features.
        y : ndarray | None
            Not used, present for API consistency.

        Returns
        -------
        self : object
            Returns self.
        r5   r   ©rÖ   )rÖ   r   r[   rm   Ú	location_ÚmeanrØ   rÞ   )r¡   rÑ   Úyr×   r   r   r   Úfit€  s     ÿ
zEmpiricalCovariance.fitc                 C   s$   t || j dd�}t||  ¡ ƒ}|S )a  Compute the log-likelihood of a Gaussian dataset.

        Uses ``self.covariance_`` as an estimator of its covariance matrix.

        Parameters
        ----------
        X_test : array-like, shape = [n_samples, n_features]
            Test data of which we compute the likelihood, where n_samples is
            the number of samples and n_features is the number of features.
            X_test is assumed to be drawn from the same distribution than
            the data used in fit (including centering).
        y : ndarray | None
            Not used, present for API consistency.

        Returns
        -------
        res : float
            The likelihood of the data set with `self.covariance_` as an
            estimator of its covariance matrix.
        Trá   )rØ   râ   Úlog_likelihoodrà   )r¡   ZX_testrä   Ztest_covÚresr   r   r   Úscore›  s     ÿzEmpiricalCovariance.scoreÚ	frobeniusc           	      C   s„   ddl m} || j }|dkr.t |d ¡}n,|dkrRt | t |j|¡¡¡}nt	dƒ‚|rl||j
d  }|rv|}n
t |¡}|S )a  Computes the Mean Squared Error between two covariance estimators.

        Parameters
        ----------
        comp_cov : array-like, shape = [n_features, n_features]
            The covariance to compare with.
        norm : str
            The type of norm used to compute the error. Available error types:
            - 'frobenius' (default): sqrt(tr(A^t.A))
            - 'spectral': sqrt(max(eigenvalues(A^t.A))
            where A is the error ``(comp_cov - self.covariance_)``.
        scaling : bool
            If True (default), the squared error norm is divided by n_features.
            If False, the squared error norm is not rescaled.
        squared : bool
            Whether to compute the squared error norm or the error norm.
            If True (default), the squared error norm is returned.
            If False, the error norm is returned.

        Returns
        -------
        The Mean Squared Error (in the sense of the Frobenius norm) between
        `self` and `comp_cov` covariance estimators.
        r   r3   ré   rO   Zspectralz1Only spectral and frobenius norms are implemented)r7   r4   rÛ   r   ÚsumZamaxZsvdvalsrÔ   rÕ   ÚNotImplementedErrorrm   Úsqrt)	r¡   Zcomp_covÚnormZscalingZsquaredr4   ÚerrorZsquared_normÚresultr   r   r   Ú
error_norm¸  s    
ÿ
zEmpiricalCovariance.error_normc                 C   s.   |   ¡ }|| j }t t ||¡| d¡}|S )a  Computes the squared Mahalanobis distances of given observations.

        Parameters
        ----------
        observations : array-like, shape = [n_observations, n_features]
            The observations, the Mahalanobis distances of the which we
            compute. Observations are assumed to be drawn from the same
            distribution than the data used in fit.

        Returns
        -------
        mahalanobis_distance : array, shape = [n_observations,]
            Squared Mahalanobis distances of the observations.

        r5   )rà   râ   r   rê   rÔ   )r¡   Zobservationsrß   Zcentered_obsZmahalanobis_distr   r   r   Úmahalanobisè  s    
 ÿzEmpiricalCovariance.mahalanobis)TF)N)N)ré   TT)r½   rÆ   rÇ   rÈ   r¥   rÞ   rà   rå   rè   rð   rñ   r   r   r   r   rÙ   ;  s   


  ÿ
0rÙ   c                 C   sF   |j d }t | | ¡ t|ƒ }||t dtj ¡ 8 }|d }|S )a9  Computes the sample mean of the log_likelihood under a covariance model

    computes the empirical expected log-likelihood (accounting for the
    normalization terms and scaling), allowing for universal comparison (beyond
    this software package)

    Parameters
    ----------
    emp_cov : 2D ndarray (n_features, n_features)
        Maximum Likelihood Estimator of covariance

    precision : 2D ndarray (n_features, n_features)
        The precision matrix of the covariance model to be tested

    Returns
    -------
    sample mean of the log-likelihood
    r   rO   ç       @)rm   r   rê   Ú_logdetr   Úpi)Zemp_covrß   r¤   Zlog_likelihood_r   r   r   ræ     s
    
ræ   c                 C   sT   ddl m} | | ¡}| ¡ |j t tj¡j }t 	||k||¡}t 
t |¡¡S )z6Compute the log det of a positive semidefinite matrix.r   r3   )r7   r4   ZeigvalshÚmaxÚsizer   ÚfinforY   ÚepsÚwhererê   r   )r<   r4   ÚvalsZtolr   r   r   ró     s
    
ró   c                 C   s:   t | ƒ}t |¡}t|ƒD ]}t| |||ƒ||< q| ¡ S )z€Infers the dimension of a dataset of shape (n_samples, n_features)
    The dataset is described by its spectrum `spectrum`.
    )r-   r   ÚemptyÚrangeÚ_assess_dimension_Úargmax)ÚspectrumÚ	n_samplesÚ
n_featuresZ
n_spectrumÚllÚrankr   r   r   Ú_infer_dimension_'  s
    
r  c              	   C   s°  ddl m} |t| ƒkr tdƒ‚| tdƒ }t|ƒD ].}|||| d ƒttjƒ||  d  7 }q6t t | d |… ¡¡}| | d }||kržd}d}	n6t | |d … ¡||  }	t |	¡ | ||  d }|| ||d  d  }
tdtj ƒ|
| d  d }d}|  	¡ }|	|||…< t|ƒD ]X}t|d t| ƒƒD ]>}|t| | | |  d||  d||    ƒt|ƒ 7 }�q@�q*|| | | |d  |t|ƒ d  }|S )Nr   )Úgammalnz5The tested rank cannot exceed the rank of the datasetrò   r5   rK   g        )
Zscipy.specialr  r-   r9   r   rü   r   rô   rê   Úcopy)rÿ   r  r   r  r  ZpuÚiÚplÚpvrÏ   rp   ÚppÚpaZ	spectrum_Újr  r   r   r   rý   2  s:    ÿÿÿ(rý   c                 C   s®   |rVt jt  | ¡dd�}t  | |t  | jd ¡f ¡}| |9 } ||d d …t jf 9 }nPt jt  |¡dd�}t  |t  |jd ¡|f ¡}| |9 } ||d d …t jf 9 }| |fS )Nr   r   r5   )r   rþ   ÚabsÚsignZarangerm   Únewaxis)ÚurÏ   Zu_based_decisionZmax_abs_colsZsignsZmax_abs_rowsr   r   r   Úsvd_flipW  s    r  çñhãˆµøä>ç:Œ0âŽyE>c              	   C   sX   t j| |t jd�}t j| |t jd�}t  t j|jd|d�|||dd�¡sTt dt	¡ |S )aÉ  Use high precision for cumsum and check that final value matches sum

    Parameters
    ----------
    arr : array-like
        To be cumulatively summed as flat
    axis : int, optional
        Axis along which the cumulative sum is computed.
        The default (None) is to compute the cumsum over the flattened array.
    rtol : float
        Relative tolerance, see ``np.allclose``
    atol : float
        Absolute tolerance, see ``np.allclose``
    )r   rQ   rM   r   T)ÚrtolÚatolZ	equal_nanzLcumsum was found to be unstable: its last element does not correspond to sum)
r   ZcumsumrY   rê   rn   ÚiscloseZtaker   r6   ÚRuntimeWarning)Úarrr   r  r  r·   Úexpectedr   r   r   Ústable_cumsumg  s     ÿþr  c                 C   sÊ   |rºt j | ¡\}}t  |¡}t  |¡}t  |¡dd d d…f }t j||dd�}t j||dd�}t j||dd d d …f dd�}||dt jd d …f   dd¡ 	¡ }t j||d� |||fS t j 
| ¡S d S )N.rM   r   éþÿÿÿ)r·   )r   r4   Úeighr  r  ZargsortZtake_along_axisr  ZswapaxesÚconjr:   )ÚaZ	hermitianÚsr  ZsgnZsidxÚvtr   r   r   r:   �  s    

$
r:   c              	   C   sâ  ddl }|dkr|dkrdS | jj}|dkr4| ¡ }|dkrD| ¡ }t ||t|ƒ¡}t|j	ddƒ�r>| j
 ||¡ |  ¡ d }t |d |d g¡}t ||g||gg¡}|jd }dd|d |d d| d d| d |d |dg	}	|j d¡|	 }
|j d¡|	 }| jdk�r"t ||
g¡nt |
|g¡}| j |¡ nŽ| j
 |  |¡|  |¡¡ | j ¡ }|dd…df  |  |¡7  < |dd	…df  d
|  |¡ 8  < |d	d…df  |  |¡7  < | j |¡ |  |¡ |  ¡  dS )zi
    crop a colorbar to show from cbar_vmin to cbar_vmax
    Used when symmetric_cbar=False is used.
    r   Nz>=z3.2.0rM   r5   rO   Ú
horizontalrk   rK   )Ú
matplotlibZlocatorZlocsrõ   Úminr   Zlinspacer-   r   Ú__version__ÚaxZset_ylimZ_meshr„   rm   rÕ   rZ   ZorientationZcolumn_stackÚoutlineZset_xyrí   Zget_xyZ	set_ticksZupdate_ticks)ZcbarZ	cbar_vminZ	cbar_vmaxr"  Zcbar_tick_locsZnew_tick_locsrÑ   ÚYÚNÚiirA   rä   Zxyr&  r   r   r   Ú_crop_colorbar–  sB    ÿ
2ÿþ
"
r*  ú<z0.48c                 K   s   t jf | |||dœ|—ŽS )N)ÚnopythonÚnogilÚfastmathÚcache)ÚnumbaÚjit)r,  r-  r.  r/  r=   r   r   r   r1  Í  s
    ÿÿr1  ZMNE_USE_NUMBAÚtruec                  K   s   dd„ }|S )Nc                 S   s   | S r   r   )Úfuncr   r   r   Ú_jitÙ  s    zjit.<locals>._jitr   )r=   r4  r   r   r   r1  Ø  s    c                 C   s2   t  |¡}t| |ƒD ]\}}||  |7  < q|S r   )r   r[   Úzip)rA   ÚweightsZ	minlengthr·   Úidxr¸   r   r   r   Úbincountá  s    
r8  c                 C   sœ   |j dkst‚|dkst‚|dkr^t |jd ¡}tt|ƒƒD ]}| |d d …|f ƒ||< q>n:t |jd ¡}tt|ƒƒD ]}| ||d d …f ƒ||< qz|S )NrO   )r   r5   r   r5   )rl   ÚAssertionErrorr   rû   rm   rü   r-   )Zfunc1dr   r  rï   r  r   r   r   Ú_np_apply_along_axisé  s    r:  c                 C   s   t tj|| ƒS r   )r:  r   rã   )r„   r   r   r   r   rã   ÷  s    rã   c                 C   sX   ddl m} z | j ¡  | d| ›d�¡ W n& tk
rR   | d| ›d�¡ Y nX dS )z,Force calling of the MPL figure close event.r5   )ÚloggerzCalled z.canvas.close_event()zCalling z.canvas.close_event() failedN)r;   r;  ZcanvasZclose_eventÚdebugr9   )Zfigr;  r   r   r   Ú_close_event  s    
r=  c                 C   s8   z|   ¡  ¡ W S  tk
r*   |  ¡  Y S X |   ¡  ¡ S r   )Zget_subplotspecZis_last_rowÚAttributeError)r%  r   r   r   Ú_is_last_row  s
    r?  c                 C   s|   t j | ¡\}}~ |dkr.|jt  |j¡j }t  t  |¡¡}t|ƒ|| k}d||  }|dd…|f }|| | 	¡ j
 S )z/Compute a pseudo-inverse of a Hermitian matrix.NrK   )r   r4   r  rö   r÷   rQ   rø   rõ   r  r  rÕ   )r  r  r  r  ÚmaxSZabove_cutoffZpsigma_diagr   r   r   rÜ     s    rÜ   c                 C   s”   t jj| dd�\}}}~ t  |¡}|dkrHt|j|j ƒt  |j¡j }t  ||| k¡}|dd…d|…f }||d|…  }||d|…   	¡ j
S )z%Compute a pseudo-inverse of a matrix.F)Zfull_matricesN)r   r4   r:   rõ   rm   r÷   rQ   rø   rê   r  rÕ   )r  r  r  r  Zvhr@  r  r   r   r   Úpinv%  s    
rA  c                 C   s(   z| j W S  tk
r"   | j Y S X d S r   )Z
point_datar>  Zpoint_arrays©Úobjr   r   r   Ú_point_data8  s    rD  c                 C   s(   z| j W S  tk
r"   | j Y S X d S r   )Z	cell_datar>  Zcell_arraysrB  r   r   r   Ú
_cell_data?  s    rE  )F)FF)N)F)T)Nr  r  )F)TTTT)N)N)9rÈ   r   Úmathr   r   Úosr   Únumpyr   r   r   r2   r?   rB   rF   rE   rj   rq   rr   r_   r–   rš   r›   rY   rÁ   r¦   rŸ   rÌ   rÍ   rØ   rÙ   ræ   ró   r  rý   r  r  r:   r*  r0  r$  rD   Zpranger1  Z	has_numbaÚgetenvÚlowerrü   r8  rã   r:  r=  r?  rÜ   rA  rD  rE  r   r   r   r   Ú<module>   s¤   
ÿ
A"î 
%
' G
%


2






