U
    f»{j·Q  ã                	   @   sæ  d dl mZ d dlmZ d dlZd dlZd dlmZm	Z	 ddl
mZ ddlmZ ddlmZ ddlmZmZ dd	lmZ dd
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namedtuple)ÚdatetimeÚtimezoneé   )ÚBaseRaw)Úcreate_info)Ú_coil_trans_to_loc)Ú_read_segments_fileÚ_mult_cal_one)ÚFIFF)Ú_quaternion_aligné   )Ú_normal_orth)Úapply_transÚ	TransformÚget_ras_to_neuromag_transÚcombine_transformsÚinvert_transformÚ_angle_between_quatsÚrot_to_quat)Úcheck_fnameÚcheck_versionÚloggerÚverboseÚwarnÚ_check_fname)ÚAnnotationsz.dapz.datz.rs3ú.cefú.ceoz.hpi©ÚinfoÚdataÚlabelsZ
events_cefZ
events_ceoÚhpiz.cdt.dpaz.cdtú.cdt.cefú.cdt.ceoz.cdt.hpi)úCurry 7úCurry 8Z_MAG1Ú Z_OTHERS©ÚmegÚeegÚmisc)ÚVÚTç{®Gáz„?gü©ñÒMbP?ç�íµ ÷Æ°>g•Ö&è.>gê-�™—q=gVçž¯Ò<)ÚcÚmÚut   Î¼ÚnÚpÚfÚCurryParameterszIn_samples, sfreq, is_ascii, unit_dict, n_chans, dt_start, chanidx_in_filec                 C   s   d| krdS dS )z!Check out the curry file version.Zcdtr'   r&   © )Zfile_extensionr8   r8   úQ/var/www/html/bwave/python/venv/lib/python3.8/site-packages/mne/io/curry/curry.pyÚ_get_curry_version;   s    r:   r8   c           	         s    d}t | dddƒ} | jddd�\}}t|ƒ}tƒ ‰ dD ]8}|t| |  } t | ¡r6| d	¡rbd	n|}| ˆ |< q6‡ fd
d„|D ƒ}|rœt| 	t
 |¡| ¡ƒ‚ˆ S )z3Store paths to a dict and check for required files.z€The following required files cannot be found: {0}.
Please make sure all required files are located in the same directory as {1}.ÚreadTÚfnameÚ.é   )Úmaxsplitr   Úeventsc                    s   g | ]}|ˆ kr|‘qS r8   r8   )Ú.0Úfield©Zmy_curryr8   r9   Ú
<listcomp>P   s      z-_get_curry_file_structure.<locals>.<listcomp>)r   Úsplitr:   ÚdictÚFILE_EXTENSIONSÚopÚisfileÚ
startswithÚFileNotFoundErrorÚformatÚnpÚunique)	r<   ÚrequiredZ_msgZ
fname_baseÚextÚversionÚkeyÚ_keyÚmissingr8   rC   r9   Ú_get_curry_file_structure@   s    

rU   c              	   C   sº   i }i }|D ]}d||< g ||< qt | ƒ�†}|D ]z}|D ]p}t |d |¡rTd||< || r�|dkr�| dd¡}d|kr‚| d¡}||  |¡ t |d |¡r8d||< q8q0W 5 Q R X |S )aÊ  Read through the lines of a curry parameter files and save data.

    Parameters
    ----------
    fname : str
        Path to a curry file.
    regex_list : list of str
        A list of strings or regular expressions to search within the file.
        Each element `regex` in `regex_list` must be formulated so that
        `regex + " START_LIST"` initiates the start and `regex + " END_LIST"`
        initiates the end of the elements that should be saved.

    Returns
    -------
    data_dict : dict
        A dictionary containing the extracted data. For each element `regex`
        in `regex_list` a dictionary key `data_dict[regex]` is created, which
        contains a list of the according data.

    Fz	 END_LISTÚ
r(   ú	z START_LISTT)ÚopenÚreÚmatchÚreplacerE   Úappend)r<   Z
regex_listZ
save_linesZ	data_dictÚregexÚfidÚlineÚresultr8   r8   r9   Ú_read_curry_linesW   s$    


ra   c                    s@  d}d}ddddddd	d
ddddddddddddddddg}t ƒ }t ƒ }t| ƒ�¤}t|ƒD ]”‰ t‡ fdd„|D ƒƒr¦ˆ  dd¡ dd¡ d ¡\}}||| ¡  d!d¡< tD ]B}	d"t|	  d# ˆ krªt|ƒ}
|
 dd¡ dd¡ d ¡d$ ||	< qªqZW 5 Q R X d%d&d'g}t	| d(d)„ |D ƒƒ}t
|d* ƒ}t|d+ ƒ}t|d, ƒd- }|d. d/k}t
|d0 ƒ}zXtt
|d1 ƒt
|d2 ƒt
|d3 ƒt
|d4 ƒt
|d5 ƒt
|d6 ƒt
|d7 ƒd8 tjƒ}W n ttfk
�rÎ   d9}Y nX |d:k�rà|}n4|d:k�rôd;| }n t |d;| ¡�st|ƒ‚n|}|d:k�r,t| |¡ƒ‚t|||||||ƒS )<z,Extract Curry params from a Curry info file.zYThe sampling frequency and the time steps extracted from the parameter file do not match.z-sfreq must be greater than 0. Got sfreq = {0}Z
NumSamplesZSampleFreqHzZ
DataFormatZSampleTimeUsecZNumChannelsZ	StartYearZ
StartMonthZStartDayZ	StartHourZStartMinZStartSecZStartMillisecZNUM_SAMPLESZSAMPLE_FREQ_HZZDATA_FORMATZSAMPLE_TIME_USECZNUM_CHANNELSZ
START_YEARZSTART_MONTHZ	START_DAYZ
START_HOURZ	START_MINZ	START_SECZSTART_MILLISECc                 3   s   | ]}|ˆ kV  qd S ©Nr8   )rA   Úvar_name©r_   r8   r9   Ú	<genexpr>›   s     z)_read_curry_parameters.<locals>.<genexpr>ú r(   rV   ú=Ú_ZDEVICE_PARAMETERSz STARTéÿÿÿÿr*   r+   r,   c                 S   s   g | ]}d t |  ‘qS )ÚCHAN_IN_FILE©Ú	CHANTYPES©rA   rR   r8   r8   r9   rD   §   s   ÿÿz*_read_curry_parameters.<locals>.<listcomp>Z
numsamplesZsamplefreqhzZsampletimeusecr0   Z
dataformatÚASCIIZnumchannelsZ	startyearZ
startmonthZstartdayZ	starthourZstartminZstartsecZstartmillisecéè  Nr   r>   )rF   rX   ÚiterÚanyr[   rE   Úlowerrl   Únextra   ÚintÚfloatr   r   ÚutcÚ
ValueErrorÚKeyErrorrM   ÚiscloserL   r7   )r<   Z
_msg_matchZ_msg_invalidZ	var_namesZ
param_dictÚ	unit_dictr^   rR   ÚvalÚtypeZ	data_unitÚtypesÚchanidx_in_fileÚ	n_samplesÚsfreqZ	time_stepÚis_asciiZ
n_channelsÚdt_startZ
true_sfreqr8   rd   r9   Ú_read_curry_parameters…   s¢                 ÷
 ÿÿÿ
ÿÿ




ù






  ÿrƒ   c              	   C   sª  t | d ƒ}t d¡}d|ddgddgf< dddg|d	d
…d
f< tdd|ƒ}| d }dddg}t|dd„ |D ƒƒ}t|dd„ |D ƒƒ}t|dd„ |D ƒƒ}t|ƒt|ƒ  krºt|ƒksÀn t‚tƒ }	dD �]ê}
t|jdt	|
   ƒdk}t
|dt	|
   ƒD �]´\}}t|	ƒd }|�r4t|jdt	|
   | ƒ}|dk�r@qþ||j|
 t|
 t|
 |dœ}|
dk�rÄt |dt	|
   | t¡}|jdk�s”t‚|d }t |t d¡g¡}||d< tj|d< næ|
dk�rªt |dt	|
   | t¡}|d }|d	d
… }t||ƒ}t |dt	|
   | t¡}tjtj |¡dd d!��sBt‚|tj |¡ }t||d"d#�}t d¡}||d	d
…d
f< t|ƒj|d	d
…d	d
…f< t|ƒ|d< tj|d< |	 |¡ qþqÊt|	ƒ}||jk�sÐt‚t |	d$d%„ d&�}	d'd„ |	D ƒ}t!||j"ƒ}| #¡ � |j$|d(< W 5 Q R X t%| ||ƒ t
|d) ƒD ]j\}}|	|  &d*¡ | '|	| ¡ |d jd+k�sht‚t(|	| d, d  |d,< t)|	| d, d  |d-< �q0||j*|j+fS ).z(Extract info from curry parameter files.r    é   ri   r   r>   g        g¸…ëQ¸Ž¿g¸…ëQ¸¾¿Nr   Úctf_megr*   r"   r+   r,   c                 S   s   g | ]}d t |  ‘qS )ÚLABELSrk   rm   r8   r8   r9   rD   Þ   s     z$_read_curry_info.<locals>.<listcomp>c                 S   s   g | ]}d t |  ‘qS )ÚSENSORSrk   rm   r8   r8   r9   rD   à   s     c                 S   s   g | ]}d t |  ‘qS )ÚNORMALSrk   rm   r8   r8   r9   rD   â   s     r)   rj   r†   )Úch_nameÚunitÚkindZ	coil_typeÚch_idxr‡   )r   ç     @�@é	   ÚlocÚcoord_framerˆ   g      ð?g-Cëâ6?)ZatolF)Úmovec                 S   s   | d S )NrŒ   r8   )Úchr8   r8   r9   Ú<lambda>   ó    z"_read_curry_info.<locals>.<lambda>©rR   c                 S   s   g | ]}|d  ‘qS )r‰   r8   )rA   Úchanr8   r8   r9   rD   "  s     Z	meas_dateZchsrŒ   )é   rŠ   Úcal),rƒ   rM   Úeyer   ra   ÚlenÚAssertionErrorÚlistr~   rl   Ú	enumeratert   rz   ÚFIFFV_CHANTYPESÚFIFFV_COILTYPESÚarrayru   ÚshapeZconcatenateÚzerosr   ÚFIFFV_COORD_HEADr   ry   ÚlinalgÚnormr   r.   r   ZFIFFV_COORD_DEVICEr\   Zn_chansÚsortedr   r€   Ú_unlockr‚   Ú_make_trans_digÚpopÚupdateÚSI_UNITSÚSI_UNIT_SCALEr   r�   )Úcurry_pathsZcurry_paramsÚRÚcurry_dev_dev_tÚlabel_fnamer}   r"   ZsensorsZnormalsZ	all_chansrR   Zchanidx_is_explicitÚindr–   Zchanidxr’   r�   ÚposÚnnÚtransZch_countZch_namesr    Zch_dictr8   r8   r9   Ú_read_curry_infoÐ   sš    

ÿÿÿ&
ÿÿÿÿ
ü





rµ   )zLeft earZNasionz	Right earc              	      s  d}d |d< | d }dt d  }t||gƒ| }t |t¡}d|_t|ƒdkr`t |d ¡ d S |d	 }d
t d  }t||gƒ| }t|ƒt|ƒks˜t	‚| 
¡ � tƒ |d< W 5 Q R X tƒ ‰ t||ƒD ]z\}}	d  }
}|tkrötj}
t| }|	ˆ |< n&| d¡�rtj}
t|dd … ƒd }|
d k	rÆ|d  t|
||	tjd�¡ qÆ| 
¡ � |d jdd„ d� W 5 Q R X tˆ ƒdk}d| k}|�rÒ|�rÒt d¡ t dd„ |d D ƒt¡}t t| d ƒd t|ƒ…dd…f ¡}tdd||dƒ}t tt d¡t|d d d…d d…f ƒƒ¡}dtj |d d d…df ¡ }t d||f ¡ t ||ddƒ}t!ddt"‡ fdd „tj#tj$tj%fD ƒŽ ƒ}| 
¡ �F t t&|ƒ|ddƒ|d< |d D ] }|j'tj(t)||d! ƒd"� �q¤W 5 Q R X n2|�râ|d#7 }n|�rò|d$7 }n|d%7 }t |¡ d S )&Nz'Leaving device<->head transform as NoneZ
dev_head_tr"   Z	LANDMARKSr*   )ri   r   r   z (no landmarks found)r�   Z
LM_REMARKSÚdigZHPIr   r>   )r‹   ÚidentÚrr�   c                 S   s   | d | d fS )Nr‹   r·   r8   )Úxr8   r8   r9   r“   Y  r”   z!_make_trans_dig.<locals>.<lambda>r•   r#   z6Composing device<->head transformation from dig pointsc                 S   s"   g | ]}|d  t jkr|d ‘qS )r‹   r¸   )r   ÚFIFFV_POINT_HPI)rA   Údr8   r8   r9   rD   ^  s    ÿz#_make_trans_dig.<locals>.<listcomp>r„   Úunknownr…   r/   r´   ro   u/      Fit a %0.1fÂ° rotation, %0.1f mm translationÚheadc                 3   s   | ]}ˆ | V  qd S rb   r8   rm   ©Zcardsr8   r9   re   n  s     z"_make_trans_dig.<locals>.<genexpr>r¸   )r�   r¸   z (no .hpi file found)z  (not all cardinal points found)z. (neither cardinal points nor .hpi file found))*rl   ra   rM   r    ru   r¡   rš   r   r    r›   r§   rœ   rF   ÚzipÚ
_card_dictr   ZFIFFV_POINT_CARDINALrJ   rº   rt   r\   ZFIFFV_COORD_UNKNOWNÚsortZascontiguousarrayÚ
_first_hpir   Zrad2degr   r¢   r   r¤   r¥   r   r   r   ÚFIFFV_POINT_NASIONÚFIFFV_POINT_LPAÚFIFFV_POINT_RPAr   rª   r£   r   )r­   r    r¯   Zno_msgr°   rR   ZlmZremarksZremarkr¸   r‹   r·   Z	has_cardsZhas_hpiZhpi_uZhpi_cZunknown_curry_tZangleÚdistZunknown_dev_tZunknown_head_tr»   r8   r¾   r9   r¨   7  sº    


  þ


ÿÿ    ÿ ÿ ÿ   ÿ þÿþ
   ÿÿ

r¨   c              	      s’   t | dƒ�V}|D ]<‰ ˆ  ¡ ‰ t‡ fdd„dD ƒƒsˆ s8qt ˆ  ¡ t¡} q\qtd| f ƒ‚W 5 Q R X |jdkstt	‚|dd … }d|_
|d }|S )	Nr¸   c                 3   s   | ]}|ˆ kV  qd S rb   r8   )rA   r¹   rd   r8   r9   re   †  s     z_first_hpi.<locals>.<genexpr>)ZFileVersionZNumCoilszCould not find valid HPI in %sr>   )ri   é   r�   )rX   Ústriprq   rM   r    rE   ru   ÚRuntimeErrorÚndimr›   r¡   )r<   r^   r#   r8   rd   r9   rÂ   �  s    rÂ   c                 C   sB   t | dddd� t| dgƒ}tj|d td�dd…dd…f }|S )	a  Read events from Curry event files.

    Parameters
    ----------
    fname : str
        Path to a curry event file with extensions .cef, .ceo,
        .cdt.cef, or .cdt.ceo

    Returns
    -------
    events : ndarray, shape (n_events, 3)
        The array of events.
    zcurry event)r   r   r$   r%   )Zendings_errZNUMBER_LIST©ZdtypeNr   r   )r   ra   rM   r    rt   )r<   Zevents_dictZcurry_eventsr8   r8   r9   Ú_read_events_curry”  s    ÿ"rÌ   Úautoc                 C   s‚   |dkrddgndg}t | |ƒ}t|d ƒ}|dkrBt|d ƒj}|dd…df | }t |jd ¡}|dd…df }t|||ƒS )a  Read events from Curry event files.

    Parameters
    ----------
    fname : str
        The filename.
    sfreq : float | 'auto'
        The sampling frequency in the file. If set to 'auto' then the
        ``sfreq`` is taken from the respective info file of the same name with
        according file extension (\*.dap for Curry 7; \*.cdt.dpa for Curry8).
        So data.cef looks in data.dap and data.cdt.cef looks in data.cdt.dpa.

    Returns
    -------
    annot : instance of Annotations | None
        The annotations.
    rÍ   r@   r    Nr   r   )rU   rÌ   rƒ   r€   rM   r¢   r¡   r   )r<   r€   rO   r­   r@   ZonsetÚdurationÚdescriptionr8   r8   r9   Ú_read_annotations_curry¬  s    
rÐ   Fc                 C   s   t | ||ƒS )a?  Read raw data from Curry files.

    Parameters
    ----------
    fname : str
        Path to a curry file with extensions .dat, .dap, .rs3, .cdt, cdt.dpa,
        .cdt.cef or .cef.
    %(preload)s
    %(verbose)s

    Returns
    -------
    raw : instance of RawCurry
        A Raw object containing Curry data.
    )ÚRawCurry)r<   Úpreloadr   r8   r8   r9   Úread_raw_curryÌ  s    rÓ   c                       s.   e Zd ZdZed‡ fdd„	ƒZdd„ Z‡  ZS )	rÑ   a,  Raw object from Curry file.

    Parameters
    ----------
    fname : str
        Path to a curry file with extensions .dat, .dap, .rs3, .cdt, cdt.dpa,
        .cdt.cef or .cef.
    %(preload)s
    %(verbose)s

    See Also
    --------
    mne.io.Raw : Documentation of attribute and methods.

    FNc              	      s®   t |dddgd�}t |d ¡}t|ƒ\}}}|d g}	t|d�}
tt| ƒj|||g|	d|
g|d� d	|kr t 	d
|d	  ¡ t
|d	 | j	d d�}|  |¡ n
t 	d¡ d S )Nr    r!   r"   )rO   r>   )r�   rt   )Ú	filenamesÚ
last_sampsZorig_formatÚ
raw_extrasr   r@   z3Event file found. Extracting Annotations from %s...r€   )r€   z)Event file not found. No Annotations set.)rU   rH   Úabspathrµ   rF   ÚsuperrÑ   Ú__init__r   r    rÐ   Zset_annotations)Úselfr<   rÒ   r   r­   Z
data_fnamer    r   r�   rÕ   rÖ   Zannots©Ú	__class__r8   r9   rÙ   ñ  s4     ÿ


     þÿÿzRawCurry.__init__c                 C   sÀ   | j | d r¢t|tƒr(t |j|j¡}t||d�}tddƒrL|| |d< nt	dƒ tj
| jd f|Žd|| … j}	|dd…d|	jd	 …f }
t|
|	|||ƒ nt| |||||||d
d�	 dS )zRead a chunk of raw data.r�   )ZskiprowsZusecolsÚnumpyz1.16.0Zmax_rowszzData reading might take longer for ASCII files. Update numpy to version 1.16.0 or greater for more efficient data reading.r   Nr>   z<f4rË   )Z_raw_extrasÚ
isinstanceÚslicerM   ZarangeÚstartÚstoprF   r   r   ZloadtxtZ
_filenamesr.   r¡   r
   r	   )rÚ   r!   ÚidxÚfirà   rá   ZcalsZmultÚkwargsÚblockZ	data_viewr8   r8   r9   Ú_read_segment_file  s*    

"        ÿzRawCurry._read_segment_file)FN)Ú__name__Ú
__module__Ú__qualname__Ú__doc__r   rÙ   ræ   Ú__classcell__r8   r8   rÛ   r9   rÑ   à  s   rÑ   )r8   )rÍ   )FN)HÚos.pathÚpathrH   Úcollectionsr   rY   rÝ   rM   r   r   Úbaser   Z	meas_infor   Útagr   Úutilsr	   r
   Ú	constantsr   Z	ctf.transr   Zsurfacer   Z
transformsr   r   r   r   r   r   r   r   r   r   r   r   r   Úannotationsr   rG   rl   ZFIFFV_MEG_CHZFIFFV_EEG_CHZFIFFV_MISC_CHrž   ZFIFFV_COIL_CTF_GRADZFIFFV_COIL_EEGZFIFFV_COIL_NONErŸ   rF   ZFIFF_UNIT_VZFIFF_UNIT_Tr«   r¬   r7   r:   rU   ra   rƒ   rµ   rÄ   rÃ   rÅ   rÀ   r¨   rÂ   rÌ   rÐ   rÓ   rÑ   r8   r8   r8   r9   Ú<module>   sr   $ ú	ú÷ÿÿÿ
.KbþJ
 