U
    f»{jÃ(  ã                   @   s¬   d dl Zd dlZd dlZddlmZ ddlmZ ddl	m
Z
 ddlmZ ddlmZ dd	lmZmZmZmZmZmZ eddd„ƒZdd„ ZeG dd„ deƒƒZddd„ZdS )é    Né   )ÚBaseRaw)ÚFIFF)Úcreate_info)Ú_read_csv_rows_cols)Ú_mult_cal_oneé   )ÚloggerÚverboseÚfill_docÚwarnÚ_check_fnameÚ_check_optionFc                 C   s   t | ||d�S )a†  Reader for a Hitachi fNIRS recording.

    Parameters
    ----------
    fname : str
        Path to the Hitachi CSV file.
    %(preload)s
    %(verbose)s

    Returns
    -------
    raw : instance of RawHitachi
        A Raw object containing Hitachi data.

    See Also
    --------
    mne.io.Raw : Documentation of attribute and methods.

    Notes
    -----
    %(hitachi_notes)s
    ©r
   )Ú
RawHitachi)ÚfnameÚpreloadr
   © r   úU/var/www/html/bwave/python/venv/lib/python3.8/site-packages/mne/io/hitachi/hitachi.pyÚread_raw_hitachi   s    r   c                 C   s   | rt d|› �ƒ‚d S )NzCould not parse file: )ÚRuntimeError)ZcondÚmsgr   r   r   Ú
_check_bad.   s    r   c                       s4   e Zd ZdZed	ddœ‡ fdd„ƒZdd„ Z‡  ZS )
r   a  Raw object from a Hitachi fNIRS file.

    Parameters
    ----------
    fname : str
        Path to the Hitachi CSV file.
    %(preload)s
    %(verbose)s

    See Also
    --------
    mne.io.Raw : Documentation of attribute and methods.

    Notes
    -----
    %(hitachi_notes)s
    FNr   c          5   
      sr  t |dddƒ}t d| ¡ t|d�‰ tƒ }tƒ }tƒ }d d g}d  } }	 }
}t|dƒ�}| ¡ }W 5 Q R X | d¡ d¡}t|ƒ}t|ƒ|ks–t	‚d	g}d
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dd„ t ||¡D ƒ¡ | t|ƒ¡ | |¡}t|ƒt|ƒd ksøt	‚|d	  d¡}t|dkdƒ d	}d }t|dd … dƒD �]p\}}t|ƒd	k�rJ�q.| d¡ d¡}t|ƒd	k�rl�q.|d	 |dd …  }}t|ƒd	k�r–dg}|dk�r¸t d|d	 › �¡ �q.|dk�rÞt|dgkd|› d�ƒ �q.|dk�rüdt|d	 ƒ }�q.|dk�rt|ƒ‚�q.|dk�r,|d	 |d< �q.|dk�rF|d	 |d< �q.|d k�r˜t|ƒ�rž|d	  d!¡}t|ƒ�rž|d	 |d"< d! |dd … ¡|d#< �q.|d$k�r¸t|d	  d%¡ƒ}	�q.|d&k�rÎ|d	 }�q.|d'k�rzt|d	 ƒ}W n tk
�rþ   Y nX ||d(d)d'œ| < �q.|d*k�räz”|d	  d!¡\}}| d+¡\}}t|ƒdk�rZd,|› �}d! |d+ ||g¡g¡}d-D ]6}ztj ||¡}W n tk
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�r(   Y nX nr|d2k�rNd3d4„ |D ƒ|d d …< nP|d5k�rŽt "d6¡}|D ]$}| #|¡ $¡ \} }!t|!ƒ||< �qfn|d7k�r. �q¢�q.t% &|t¡}t|ƒd8k�sÀt	‚||d   d¡ d¡}
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|, }-||- }.|.|)|, dM< |(|+d8  \}/}0|t% .t% /|.| ¡¡ }1dN|/d › dO|0d › d!|1› �|
|,< �qò||d8 d …  }ˆ dP< t|ƒd8 }2|	d k	�r´|d k	�r´|j0|	 |j1|j2f|dQ< |d k�rÒt dRddd	d	d	¡}|j3tj4j5dS�}|�rð||dT< t6|
||"dU�}3|3 7¡ �D |3 8|¡ ||3dV< t|)ƒD ]"\}}4|4|3dW | dX d d …< �q"W 5 Q R X t9ƒ j:|3||g|2gˆ g|dY� d S )ZNÚreadTr   z
Loading %s)r   Úrbzlatin-1z
r   Ú
úc                 s   s   | ]}|  ¡ V  qd S ©N)Úend)Ú.0Úar   r   r   Ú	<genexpr>Y   s     z&RawHitachi.__init__.<locals>.<genexpr>é   z,
ÚHeaderzno header foundú,Ú zFile Versionz#Reading Hitachi fNIRS file version ZAnalyzeModeZ
Continuousznot continuous data (ú)zSampling Period[s]Ú	ExceptionÚCommentÚdescriptionZIDZhis_idÚNameú Z
first_nameÚ	last_nameZAgeÚyZMode)zHPF[Hz]zLPF[Hz]ZhighpassZlowpassÚDateú:Ú0)z%m/%d/%y %H:%Mz%Y/%m/%d %H:%Mz„Extraction of measurement date failed. Please report this as a github issue. The date is being set to January 1st, 2000, instead of ZSex)ZfemaleZmaleZsexzWave[nm]c                 S   s   g | ]}t |ƒ‘qS r   ©Úint)r   Úpartr   r   r   Ú
<listcomp>¨   s     z'RawHitachi.__init__.<locals>.<listcomp>zWave Lengthz^(.*)\(([0-9\.]+)\)$ÚDatar   ZProbe1ZTimeÚ	keep_maskc                    s    g | ]\}}ˆ d  | r|‘qS )r6   r   )r   ÚciÚch_name©Z	raw_extrar   r   r4   ¶   s    ÿc                 S   s   g | ]}|  d ¡rdnd‘qS )ZCHÚfnirs_cw_amplitudeZstim)Ú
startswith)r   r8   r   r   r   r4   ¸   s   þc                 S   s   g | ]\}}|d kr|‘qS )r:   r   )r   r8   Zch_typer   r   r   r4   ¼   s    ÿzETG-100zETG-7000zETG-4000)Ú3x3Z3x5Z4x4Z3x11zHitachi modec                 S   s   g | ]}t |ƒ‘qS r   r1   )r   Úxr   r   r   r4   Ç   s     r=   z Constructing pairing matrix for z (r<   )Úné   ÚUr:   é	   ÚSZ_DÚboundsÚbirthdayiÐ  )ÚtzinfoÚsubject_info)Úch_typesÚ	meas_dateZchsÚloc)Ú	filenamesZ
last_sampsZ
raw_extrasr
   );r   r	   ÚinfoÚdictÚopenr   ÚdecodeÚrstripÚlenÚAssertionErrorÚextendÚreÚfinditerÚappendÚsplitr   Ú	enumerateÚfloatÚNotImplementedErrorÚjoinr2   Ú
ValueErrorÚdtÚdatetimeÚstrptimer'   r   r   Úreprr   ZFIFFV_SUBJ_SEX_FEMALEZFIFFV_SUBJ_SEX_MALEÚlowerÚKeyErrorÚcompileÚmatchÚgroupsÚnpÚarrayZin1dÚzipr   ÚsortedÚ_compute_pairsZzerosÚwhereZargminÚabsÚyearÚmonthÚdayÚreplaceÚtimezoneÚutcr   Z_unlockÚupdateÚsuperÚ__init__)5Úselfr   r   r
   Z
info_extrarF   Zch_wavelengthsZfnirs_wavelengthsrH   ZageZch_namesZsfreqZfidÚlinesZoldlenrC   r   ÚlineZliÚmodeÚpartsÚkindÚnameÚfreqZmdyZHMÚHÚMZmdyHMÚfmtZch_regexZentÚ_ÚvrG   Z
nirs_namesZn_nirsÚnamesZn_rowZn_colÚpairsZlocsZidxsÚiiÚidxr8   Zacc_freqZsidxZdidxZnom_freqZ	last_samprK   rI   ©Ú	__class__r9   r   rt   G   sB   



 
ÿ









ÿÿÿ



þ
þ




þü
ÿ&þ


&    þzRawHitachi.__init__c           	   	   C   sN   t | j| d ||| j| d | j| d ddd„ d�j}t|||||ƒ |S )z#Read a segment of data from a file.r   r6   rC   r$   c                 S   s$   |   dd¡  dd¡  dd¡  dd¡S )Nr   r   z

r$   r/   r%   )ro   )r=   r   r   r   Ú<lambda>ù   s     ÿ þ ýz/RawHitachi._read_segment_file.<locals>.<lambda>)Úsepro   )r   Z_raw_extrasÚTr   )	ru   Údatar…   ÚfiÚstartÚstopZcalsZmultZ	this_datar   r   r   Ú_read_segment_fileó   s       ü	zRawHitachi._read_segment_file)F)Ú__name__Ú
__module__Ú__qualname__Ú__doc__r
   rt   r�   Ú__classcell__r   r   r†   r   r   3   s
    ,r   r"   c                 C   sx  | | }t  |¡d  | |¡}t  | |ft¡}t| ƒD ]}t  ||| ¡d ||< q6tƒ }t| ƒD ]´}t|d ƒD ]D}|||f |||d f f}	|||f r¬|	d d d… }	| |	¡ qr|| d krÆqbt|ƒD ]F}|||f ||d |f f}	|||f �r
|	d d d… }	| |	¡ qÎqb|dk�rp|dk�s0t‚t  	|t
¡}||jdd� d }
t j||
f }tdd„ |D ƒƒ}t|ƒS )Nr   r"   éÿÿÿÿr   )Zaxisc                 s   s   | ]}t |ƒV  qd S r   )Útuple)r   Úrowr   r   r   r!     s     z!_compute_pairs.<locals>.<genexpr>)re   ZarangeZreshapeÚemptyÚboolÚrangeÚlistrU   rQ   rf   r2   ÚmaxZr_r–   )Zn_rowsZn_colsr>   Zn_totZsd_idxZd_boolÚrirƒ   r7   ÚpairÚsecondr   r   r   ri     s4    
ri   )FN)r"   )r]   r\   rS   Únumpyre   Úbaser   Ú	constantsr   Z	meas_infor   Z	nirx.nirxr   Úutilsr   r	   r
   r   r   r   r   r   r   r   ri   r   r   r   r   Ú<module>   s     O