U f{j:@sddlZddlmZddlmZmZmZmZm Z ddl m Z ddl m Z mZddlmZddlmZdd lmZdd lmZdd lmZmZmZed&ddZed'ddZddZed(d"d#Zed)d$d%ZdS)*N)_annotations_starts_stops)loggerverbose sum_squaredwarnint_like) filter_data)Epochs BaseEpochs)BaseRaw)Evoked)RawArray) create_info) _picks_to_idx pick_types pick_channels333333?@#10sc % sttdd} t||d|dddddd } t| } t} t|}| |d} t| }td }t| d| |d <t| | | d |d <t| | d | d |d <t|}|d krt ddd}nt |t rt dn|g}t }|D]b}||}t }t }t }d }||| kr| ||| }|d |krt|}|||tt||ktjd kt}|||tt||j|| 7}n|d 7}q&t|d kr|d|dt|}t|}t|}|||}t||kd }t||} ||| |k}!|!|7}!|!jd kr||!q|rtfdd|D}"tt|"dk|"dkd }#|#jd krt|"|#}$nd}$tt|"|$}#||#}n tg}|S)aDetect QRS component in ECG channels. QRS is the main wave on the heart beat. Parameters ---------- sfreq : float Sampling rate ecg : array ECG signal thresh_value : float | str qrs detection threshold. Can also be "auto" for automatic selection of threshold. levels : float number of std from mean to include for detection n_thresh : int max number of crossings l_freq : float Low pass frequency h_freq : float High pass frequency %(tstart_ecg)s %(filter_length_ecg)s %(verbose)s Returns ------- events : array Indices of ECG peaks. N@g^@N? zero-doublehannfirwin2)phase fir_window fir_designrrrautog333333?g?g?z)threshold value must be "auto" or a floatcs(g|] }dt|ttqS)r)lenfloat).0ZcevecgsfreqT/var/www/html/bwave/python/venv/lib/python3.8/site-packages/mne/preprocessing/ecg.py xsz qrs_detector..gd@gD@gT@)introundr npabsr$emptymaxmeanarange isinstancestr ValueErrorlistargmaxappendsumdiffZastypeZint64sqrtrsizearrayZstdwhere logical_andZmedianZargmin)%r)r( thresh_valueZlevelsZn_threshl_freqh_freqtstart filter_lengthrZwin_sizeZfiltecgZecg_absinitZn_samples_startZn_pointsZmaxptZinit_maxZ thresh_runsZ clean_eventsZthresh1ZnumcrosstimeZrmsiiZwindowZmax_timenxZrms_meanZrms_stdZ rms_threshbaZceZratesidxZ ideal_rater*r'r+ qrs_detectors"                      rNr#r"FTc CsT| rdnd} ~ t||} | dk rBtd|j| |j| d} nt|ddd\} }| jdkrl| jdd kspt| d} t || d d d \}}t }|| }t t ||D]Z\}\}}||kr| nd }|t| |||jd||dg|ddd dddddd|dqt|} t|jd| ||dddd}tt| t}d}t ||D]@\}}||}|dksjtt||||||<||7}qL|t| kst|jdkr||}n tg}t|}t| |jd|}|d}||}td||ft||jt|t|t|tgj}|| |f}| tj} |rP|| f7}|S)aFind ECG events by localizing the R wave peaks. Parameters ---------- raw : instance of Raw The raw data. %(event_id_ecg)s %(ch_name_ecg)s %(tstart_ecg)s %(l_freq_ecg_filter)s qrs_threshold : float | str Between 0 and 1. qrs detection threshold. Can also be "auto" to automatically choose the threshold that generates a reasonable number of heartbeats (40-160 beats / min). %(filter_length_ecg)s return_ecg : bool Return the ECG data. This is especially useful if no ECG channel is present in the input data, so one will be synthesized. Defaults to ``False``. %(reject_by_annotation_all)s .. versionadded:: 0.18 %(verbose)s Returns ------- ecg_events : array The events corresponding to the peaks of the R waves. ch_ecg : string Name of channel used. average_pulse : float The estimated average pulse. If no ECG events could be found, this will be zero. ecg : array | None The ECG data of the synthesized ECG channel, if any. This will only be returned if ``return_ecg=True`` was passed. See Also -------- create_ecg_epochs compute_proj_ecg )edgebadr*Nz)Using channel %s to identify heart beats.)picks)startstoprrr!reject_by_annotationT)inverterrorr)rZfirFrrr)copyrrr r)rErBrCrDrrzr? first_sampZzerosZonesTZnewaxis) rawevent_idch_namerErCrDZ qrs_thresholdrF return_ecgrUrZskip_by_annotationZidx_ecgr(_ZonsetsZendsZecgsZmax_idxsirSrTZ use_verboseZ ecg_eventsZremapoffsetZthis_lenZn_eventsZ duration_secZ duration_minZ average_pulseoutr*r*r+find_ecg_eventss/                rmc Cs|dkr&t|jddddddddd }n,||jkrBtd||jft|j|gd}t|dkrbdSt|d krtd |j|d|dS) z8Get ECG channel index, if no channel found returns None.NFTbads)megeegZstimZeogr(Zemgref_megexcludez%s not in channel list (%s))includerr!z/More than one ECG channel found. Using only %s.)rrZr[r7rr$r)rginstZecg_idxr*r*r+rYs(     rYrr!cCsd|kp|dk }| r$|s| s$tdt|||||d| d\}}}}t|j|ddd}t|||||d | ||| | | |d }| rt|td g|jd dgd |jd}|j8ddddg}|j D]\}}||kr||j|<qW5QRXt||j |||d dg| |dd }| |g}|S)aConveniently generate epochs around ECG artifact events. %(create_ecg_epochs)s .. note:: Filtering is only applied to the ECG channel while finding events. The resulting ``ecg_epochs`` will have no filtering applied (i.e., have the same filter properties as the input ``raw`` instance). Parameters ---------- raw : instance of Raw The raw data. %(ch_name_ecg)s %(event_id_ecg)s %(picks_all)s tmin : float Start time before event. tmax : float End time after event. %(l_freq_ecg_filter)s %(reject_epochs)s %(flat)s %(baseline_epochs)s preload : bool Preload epochs or not (default True). Must be True if keep_ecg is True. keep_ecg : bool When ECG is synthetically created (after picking), should it be added to the epochs? Must be False when synthetic channel is not used. Defaults to False. %(reject_by_annotation_epochs)s .. versionadded:: 0.14.0 %(decim)s .. versionadded:: 0.21.0 %(verbose)s Returns ------- ecg_epochs : instance of Epochs Data epoched around ECG R wave peaks. See Also -------- find_ecg_events compute_proj_ecg Notes ----- If you already have a list of R-peak times, or want to compute R-peaks outside MNE-Python using a different algorithm, the recommended approach is to call the :class:`~mne.Epochs` constructor directly, with your R-peaks formatted as an :term:`events` array (here we also demonstrate the relevant default values):: mne.Epochs(raw, r_peak_events_array, tmin=-0.5, tmax=0.5, baseline=None, preload=True, proj=False) # doctest: +SKIP r(NzWkeep_ecg can be True only if the ECG channel is created synthetically and preload=True.T)rgrfrCrDrhrUallr*)rrF) eventsrftmintmaxprojflatrRrejectbaselinerUpreloaddecimzECG-SYNr))r[r)Zch_types)rcr[ZchsZnchanrnr) ryrfrzr{r|rRrrr) r7rmrrZr rrrcZ_unlockitemsryZ add_channels)rergrfrRrzr{rCrDr~r}rrZkeep_ecgrUrrZhas_ecgryrir(Z ecg_epochsZecg_rawignorekvZ syn_epochsr*r*r+create_ecg_epochssfA    rc sRtfdddDstddD]}|kr"q4q"tdddd|tj|ddd }d }d }t|trttrd }nt|d } t|trttrd} nt|||| |i} ttr|rdnd}j |fddi| d|i\} } nLtt r t j |f| } j} n ttr@j |f| } j} | jddd| fS)z-Create ECG signal from cross channel average.c3s|]}|kVqdS)Nr*)r&crtr*r+ ~sz_make_ecg..)magZgradz)Unable to generate artificial ECG channelz!Reconstructing ECG signal from {}Z MagnetometersZ GradiometersF)rorprqzinteger arguments for the start and stop parameters are not supported for Epochs and Evoked objects. Please consider using float arguments specifying start and stop time in seconds.rzrSr{rTZomitNZ return_timesTrUr)Zkeepdims)anyr7rrZformatrr5rr r\r r/ZhstackrXtimesr r3) rtrSrTrUrchrRmsgZbegin_param_nameZend_param_namekwargsr(rr*rr+r]{sJ         r])rrrrrrrN) rONr#rrr"rFTN)NrONrurrvrwNNNTFTr!N)FN) numpyr/ annotationsrutilsrrrrrfilterr Zepochsr r Zio.baser Zevokedr iorZ io.meas_inforZio.pickrrrrNrmrYrr]r*r*r*r+sX       v p f