U
    f»{j·  ã                   @   sV   d dl ZddlmZ ddlmZ ddlmZmZm	Z	 ddl
mZ e	ddœd	d
„ƒZdS )é    Né   )ÚBaseRaw)ÚFIFF)Ú_validate_typeÚwarnÚverboseé   )Ú_validate_nirs_info)r   c                C   s  |   ¡  ¡ } t| tdƒ t| jdd�}t | j| dk¡rªt	dƒ tj
}|D ]6}tj| j| | j| d� t|| j|  ¡ p~|ƒ}qL|D ] }tj| j| || j| d� qˆ|D ]f}t | j| ¡}| j|  |  < tj| j| | j| d� | j|  d9  < tj| jd | d	< q®| S )
zãConvert NIRS raw data to optical density.

    Parameters
    ----------
    raw : instance of Raw
        The raw data.
    %(verbose)s

    Returns
    -------
    raw : instance of Raw
        The modified raw instance.
    ÚrawZcw_amplitude)Zfnirsr   z3Negative intensities encountered. Setting to abs(x))ÚoutéÿÿÿÿZchsZ	coil_type)ÚcopyZ	load_datar   r   r	   ÚinfoÚnpÚanyÚ_datar   ÚinfÚabsÚminÚmaximumZmeanÚlogr   ZFIFFV_COIL_FNIRS_OD)r
   r   ZpicksZmin_ÚpiZ	data_mean© r   úf/var/www/html/bwave/python/venv/lib/python3.8/site-packages/mne/preprocessing/nirs/_optical_density.pyÚoptical_density   s$    r   )Únumpyr   Úior   Zio.constantsr   Úutilsr   r   r   Znirsr	   r   r   r   r   r   Ú<module>   s   