U
    f»{j   ã                   @   sR   d dl ZddlmZ ddlmZmZ ddlmZ eddœdd	„ƒZ	e	Z
d
d„ ZdS )é    Né   )ÚBaseRaw)Ú_validate_typeÚverboseé   )Ú_validate_nirs_info)r   c                C   s\   |   ¡  ¡ } t| tdƒ t| jƒ}t|ƒs2tdƒ‚|D ] }t| j	| | jd ƒ| j	|< q6| S )aÈ  Apply temporal derivative distribution repair to data.

    Applies temporal derivative distribution repair (TDDR) to data
    :footcite:`FishburnEtAl2019`. This approach removes baseline shift
    and spike artifacts without the need for any user-supplied parameters.

    Parameters
    ----------
    raw : instance of Raw
        The raw data.
    %(verbose)s

    Returns
    -------
    raw : instance of Raw
         Data with TDDR applied.

    Notes
    -----
    TDDR was initially designed to be used on optical density fNIRS data but
    has been enabled to be applied on hemoglobin concentration fNIRS data as
    well in MNE. We recommend applying the algorithm to optical density fNIRS
    data as intended by the original author wherever possible.

    There is a shorter alias ``mne.preprocessing.nirs.tddr`` that can be used
    instead of this function (e.g. if line length is an issue).

    References
    ----------
    .. footbibliography::
    Úrawz9TDDR should be run on optical density or hemoglobin data.Zsfreq)
ÚcopyZ	load_datar   r   r   ÚinfoÚlenÚRuntimeErrorÚ_TDDRÚ_data)r   r   ZpicksÚpick© r   ú[/var/www/html/bwave/python/venv/lib/python3.8/site-packages/mne/preprocessing/nirs/_tddr.pyÚ'temporal_derivative_distribution_repair   s    !
r   c                 C   sÖ  ddl m}m} t | ¡} t| jƒdkrbt| jd ƒD ]&}t| d d …|f |ƒ| d d …|f< q6| S d}d}|d | }t 	| ¡}| |8 } |dk r°|||ƒ\}	}
||	|
| dd�}n| }| | }d}t 
t | j¡j¡}tj}d}t |¡}t |j¡}|d	k �r˜|d }|}t || ¡t |¡ }t || ¡}d
t |¡ }|dk�rL�q˜|||  }d|d  |dk  d }t|| ƒ|tt|ƒt|ƒƒ k rô�q˜qô|||  }t t |dd¡¡}|t 	|¡ }|| | }|S )Nr   )ÚbutterÚfiltfilté   g      à?r   r   )Zpadleng=
×£p½@é2   g)ËÇº¸÷?g        )Zscipy.signalr   r   ÚnpÚarrayr   ÚshapeÚranger   ZmeanÚsqrtZfinfoZdtypeÚepsÚinfÚdiffZonesÚsumÚabsZmedianÚmaxZcumsumÚinsert)ÚsignalZsample_rater   r   ÚchZfilter_cutoffZfilter_orderZFcZsignal_meanZfbÚfaZ
signal_lowZsignal_highZtuneÚDÚmuÚiterZderivÚwZmu0ÚdevÚsigmaÚrZ	new_derivZsignal_low_correctedZsignal_correctedr   r   r   r   C   sN    
$



"r   )Únumpyr   Úior   Úutilsr   r   Znirsr   r   Ztddrr   r   r   r   r   Ú<module>   s   .