U f{j4@sddlmZddlZddlmZddlmZddlm Z m Z m Z m Z ddl mZd d Zd d Zd dZddZd ddZe dejddddddfddddZe dejdddddddddddf ddddZe dejddddddddddf ddddZdS)!)partialN) parallel_func) _picks_to_idx)loggerverbose _time_mask _check_option)psd_array_multitapercCsxt|d}|dkrtdtd|ddd}dtd|dd|}td|dd}|||dd<|S)Nr rg?)npZonesarangeZcumsum)nbiasesZii_2ZsumsidxrU/var/www/html/bwave/python/venv/lib/python3.8/site-packages/mne/time_frequency/psd.py_median_biasessrcCsz||\}}}|d|ddf}|dkr8tj|dd}n>|dkrvt|jd}t|d}tj|dd||}|S)N.meanZaxismedian)r ZnanmeanrshapeisnansumZ nanmedian)epochfuncaveragefreq_sl_spectrrrrr_decomp_aggregate_mask/sr"cCs<t|||d}|jdkr,tjtd|f|}n t|f|}|S)z Aux function.)rrrgcAr)dictnbytesr Zapply_along_axisr")rrrrkwargsr!rrr _spect_func<s  r&cCsj|dkr ||kr td||f|dks0||kr4|n|}||krD|n|}||kr`td||f|||fS)z1Ensure n_fft, n_per_seg and n_overlap make sense.NzIf n_per_seg is None n_fft is not allowed to be > n_times. If you want zero-padding, you have to set n_per_seg to relevant length. Got n_fft of %d while signal length is %d.zan_overlap cannot be greater than n_per_seg (or n_fft). Got n_overlap of %d while n_per_seg is %d.) ValueError)rn_fft n_per_seg n_overlaprrr _check_nfftLsr+FcCsddlm}ddlm}ddlm}t||||fsFtdt|t |j |||j dd} t |j |dd d }|r| }|j d} t||rt| d d d g\} } |rd nd} |j|| | d| d}n@t||r|j|ddddd| f}n|j|dd| f}|| fS)z'Check PSD data / pull arrays from inst.r)BaseRaw) BaseEpochs)Evokedz8inst must be an instance of Epochs, Raw, or Evoked. Got sfreq)r/dataF)Z with_ref_megrrNaNNr reject_by_annotation)picks)Zio.baser,Zepochsr-Zevokedr. isinstancer'typertimesinforcopyZ apply_projr whereget_datar0)insttmintmaxr4projr3r,r-r.Z time_maskr/startstopZrbar0rrr_check_psd_data\s(          rBrZhamming)rc  stdd|jdd} |jd} |d| }t| |||\}}}|t|} td| tj|ddtd||}||k||k@}| st d |d |t t |d d dgd dg~|}t d |d |d|d| d d dlm}tt|d\}}t|||||| dt||}|fdd|D}tj|d d}| t|f}dkr|d}||_||fS)aCompute power spectral density (PSD) using Welch's method. Parameters ---------- x : array, shape=(..., n_times) The data to compute PSD from. sfreq : float The sampling frequency. fmin : float The lower frequency of interest. fmax : float The upper frequency of interest. n_fft : int The length of FFT used, must be ``>= n_per_seg`` (default: 256). The segments will be zero-padded if ``n_fft > n_per_seg``. n_overlap : int The number of points of overlap between segments. Will be adjusted to be <= n_per_seg. The default value is 0. n_per_seg : int | None Length of each Welch segment (windowed with a Hamming window). Defaults to None, which sets n_per_seg equal to n_fft. %(n_jobs)s %(average_psd)s .. versionadded:: 0.19.0 %(window_psd)s .. versionadded:: 0.22.0 %(verbose)s Returns ------- psds : ndarray, shape (..., n_freqs) or (..., n_freqs, n_segments) The power spectral densities. If ``average='mean`` or ``average='median'``, the returned array will have the same shape as the input data plus an additional frequency dimension. If ``average=None``, the returned array will have the same shape as the input data plus two additional dimensions corresponding to frequencies and the unaggregated segments, respectively. freqs : ndarray, shape (n_freqs,) The frequencies. Notes ----- .. versionadded:: 0.14.0 r)NrrNrz!Effective window size : %0.3f (s)rr )Zdtypez"No frequencies found between fmin=z and fmax=rzSpectogram using z-point FFT on z samples with z overlap and z window) spectrogram)n_jobs)ZnoverlapZnpersegZnfftfswindowc3s|]}|dVqdS))rrrNr).0drrrZ my_spect_funcrr sz"psd_array_welch..r)r)r rZreshaper+floatrr8r ranyr'slicer:debugZ scipy.signalrDrr&rZ array_splitZ concatenatelen)xr/fminfmaxr(r*r)rErrGrZdshapeZn_timesZwin_sizeZfreqsZ freq_maskrDparallelZx_splitsZf_spectZpsdsrrrJrpsd_array_welchzsL2     "   rUTc Cs6t||||| | d\}}t|||||||| | | |d S)a`Compute the power spectral density (PSD) using Welch's method. Calculates periodograms for a sliding window over the time dimension, then averages them together for each channel/epoch. Parameters ---------- inst : instance of Epochs or Raw or Evoked The data for PSD calculation. fmin : float Min frequency of interest. fmax : float Max frequency of interest. tmin : float | None Min time of interest. tmax : float | None Max time of interest. n_fft : int The length of FFT used, must be ``>= n_per_seg`` (default: 256). The segments will be zero-padded if ``n_fft > n_per_seg``. If n_per_seg is None, n_fft must be <= number of time points in the data. n_overlap : int The number of points of overlap between segments. Will be adjusted to be <= n_per_seg. The default value is 0. n_per_seg : int | None Length of each Welch segment (windowed with a Hamming window). Defaults to None, which sets n_per_seg equal to n_fft. %(picks_good_data_noref)s proj : bool Apply SSP projection vectors. If inst is ndarray this is not used. %(n_jobs)s %(reject_by_annotation_raw)s .. versionadded:: 0.15.0 %(average_psd)s .. versionadded:: 0.19.0 %(window_psd)s .. versionadded:: 0.22.0 %(verbose)s Returns ------- psds : ndarray, shape (..., n_freqs) or (..., n_freqs, n_segments) The power spectral densities. If ``average='mean`` or ``average='median'`` and input is of type Raw or Evoked, then psds will be of shape (n_channels, n_freqs); if input is of type Epochs, then psds will be of shape (n_epochs, n_channels, n_freqs). If ``average=None``, the returned array will have an additional dimension corresponding to the unaggregated segments. freqs : ndarray, shape (n_freqs,) The frequencies. See Also -------- mne.io.Raw.plot_psd mne.Epochs.plot_psd psd_multitaper psd_array_welch Notes ----- .. versionadded:: 0.12.0 r2) rRrSr(r*r)rrErGr)rBrU)r<rRrSr=r>r(r*r)r4r?rEr3rrGrr0r/rrr psd_welchsH   rVlengthc  Cs4t|||| | | d\}}t||||||||| | d S)aCompute the power spectral density (PSD) using multitapers. Calculates spectral density for orthogonal tapers, then averages them together for each channel/epoch. See :footcite:`Slepian1978` for a description of the tapers and :footcite:`PercivalWalden1993` for the general method. Parameters ---------- inst : instance of Epochs or Raw or Evoked The data for PSD calculation. fmin : float Min frequency of interest. fmax : float Max frequency of interest. tmin : float | None Min time of interest. tmax : float | None Max time of interest. bandwidth : float The bandwidth of the multi taper windowing function in Hz. The default value is a window half-bandwidth of 4. adaptive : bool Use adaptive weights to combine the tapered spectra into PSD (slow, use n_jobs >> 1 to speed up computation). low_bias : bool Only use tapers with more than 90%% spectral concentration within bandwidth. %(normalization)s %(picks_good_data_noref)s proj : bool Apply SSP projection vectors. If inst is ndarray this is not used. %(n_jobs)s %(reject_by_annotation_raw)s %(verbose)s Returns ------- psds : ndarray, shape (..., n_freqs) The power spectral densities. If input is of type Raw, then psds will be shape (n_channels, n_freqs), if input is type Epochs then psds will be shape (n_epochs, n_channels, n_freqs). freqs : ndarray, shape (n_freqs,) The frequencies. See Also -------- mne.io.Raw.plot_psd mne.Epochs.plot_psd psd_array_multitaper psd_welch csd_multitaper Notes ----- .. versionadded:: 0.12.0 References ---------- .. footbibliography:: r2)rRrS bandwidthadaptivelow_bias normalizationrEr)rBr )r<rRrSr=r>rXrYrZr[r4r?rEr3rr0r/rrrpsd_multitaper%sC   r\)F) functoolsrnumpyr rTrZio.pickrutilsrrrr Z multitaperr rr"r&r+rBinfrUrVr\rrrrsZ       Z O